?::ZNF384(ncbi:171017)

Source: CIViC variant id 5186: ?::ZNF384 Fusion

Recipes that this example satisfies: None

Attributes

• id: civic.vid:5186, where vid stands for Variant ID, derived from the Variant ID contained within the CIViC URL for this genomic alteration.

• type: CategoricalVariant, as required by the specification.

• name: ?::ZNF384(ncbi:171017), the human-readable label given to the fusion by CIViC, with gene identifiers per the VICC Fusion representation recommendation. CIViC provided NCBI identifiers for the genes, so those were used.

• description: “An optional field to describe ?::ZNF384(ncbi:171017)”, a placeholder since CIViC does not provide a longform description for this fusion.

• aliases: CIViC provides “ZNF384 Fusion” as an alias for this fusion; ?::ZNF384 was also added as an example alias.

• extensions: No extensions are included in this example.

• mappings: No mappings are included in this example.

Constraints

Adjacency Constraint: The adjoinedElements array specifies an UnspecifiedElement for the unknown 5’ partner and ZNF384 (ncbi:171017) as a mappable concept for the 3’ partner. The orderKnown field is set to true to indicate that ZNF384 is the known 3’ partner in this fusion.

Members

This example does not include members.

Full example: JSON

{
  "id": "civic.vid:5186",
  "type": "CategoricalVariant",
  "name": "?::ZNF384(ncbi:171017)",
  "description": "An optional field to describe ?::ZNF384(ncbi:171017).",
  "aliases": [
    "?::ZNF384",
    "ZNF384 Fusion"
  ],
  "constraints": [
    {
      "type": "AdjacencyConstraint",
      "orderKnown": true,
      "adjoinedElements": [
        {
          "type": "UnspecifiedElement"
        },
        {
          "id": "ncbi:171017",
          "conceptType": "Gene",
          "name": "ZNF384",
          "primaryCoding": {
            "id": "ncbi:171017",
            "name": "ZNF384",
            "system": "https://www.ncbi.nlm.nih.gov/gene",
            "code": "171017",
            "iris": [
              "https://www.ncbi.nlm.nih.gov/gene/171017"
            ]
          }
        }
      ]
    }
  ]
}

Full example: YAML